通过conda安装纯净环境的SCENIC

发布于 2022-02-12  483 次阅读


  • https://scenic.aertslab.org/tutorials/
  • https://anaconda.org/conda-forge/r-base
  • conda create -n scenic -c conda-forge r-reticulate
  • conda activate scenic
  • install.packages("BiocManager")
  • BiocManager::install("AUCell")
  • conda install -c conda-forge --strict-channel-priority r-arrow
  • conda install -c bioconda bioconductor-rcistarget
  • BiocManager::install(c("GENIE3"))
  • BiocManager::install(c("zoo", "mixtools", "rbokeh"))
  • BiocManager::install(c("DT", "NMF", "ComplexHeatmap", "R2HTML", "Rtsne"))
  • BiocManager::install(c("doMC", "doRNG"))
  • install.packages("devtools")
  • devtools::install_local("SCopeLoomR-master.zip")
  • devtools::install_local("SCENIC-master.zip")
  • library(SCENIC)
  • https://limour.top/1098.html
  • install.packages(c('repr', 'IRdisplay', 'evaluate', 'crayon', 'pbdZMQ', 'uuid', 'digest', 'Cairo', 'IRkernel'), repos="http://mirrors.tuna.tsinghua.edu.cn/CRAN/" )
  • IRkernel::installspec(name='scenic', displayname='r-scenic')

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